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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
BRCA cis rs8014204 1 rs10483863 chr14:75322327 RPS6KL1 chr14:75372347-75389958:- -0.17 -4.64 3.91E-6 Caffeine consumption
BRCA cis rs1056667 1 rs10484442 chr6:26555879 BTN2A3 chr6:26422317-26431927:+ 0.16 5.28 1.6E-7 Educational attainment
BRCA cis rs1056667 1 rs10484442 chr6:26555879 C6orf41 chr6:26924772-26991752:+ -0.13 -4.04 5.62E-5 Educational attainment
BRCA cis rs1056667 1 rs10484442 chr6:26555879 ZNF322A chr6:26634612-26659963:- -0.1 -3.42 0.000639 Educational attainment
BRCA cis rs867186 1 rs10485508 chr20:33605098 MMP24 chr20:33814539-33864804:+ -0.23 -3.93 8.9E-5 Anticoagulant levels;D-dimer levels;Protein C levels;Factor VII levels;Hemostatic factors and hematological phenotypes
BRCA cis rs867186 1 rs10485508 chr20:33605098 PROCR chr20:33758727-33765164:+ -0.25 -5.02 5.99E-7 Anticoagulant levels;D-dimer levels;Protein C levels;Factor VII levels;Hemostatic factors and hematological phenotypes
BRCA cis rs11799420 1 rs10489249 chr1:171714521 VAMP4 chr1:171669298-171711214:- 0.24 7.16 1.53E-12 Hippocampal atrophy
BRCA cis rs11799420 1 rs10489251 chr1:171717534 VAMP4 chr1:171669298-171711214:- 0.24 6.67 4.18E-11 Hippocampal atrophy
BRCA cis rs4665058 1 rs10490004 chr2:160076140 WDSUB1 chr2:160092305-160143236:- 0.29 3.72 0.00021 Sudden cardiac arrest
BRCA cis rs4665058 1 rs10490005 chr2:160075645 WDSUB1 chr2:160092305-160143236:- 0.29 3.69 0.000237 Sudden cardiac arrest
BRCA cis rs4118325 1 rs10494057 chr1:107576399 NTNG1 chr1:107682629-108024471:+ 0.17 3.69 0.000237 AIDS
BRCA cis rs4118325 1 rs10494057 chr1:107576399 PRMT6 chr1:107599267-107601907:+ 0.24 4.74 2.42E-6 AIDS
BRCA cis rs12143789 1 rs10494217 chr1:119469188 WARS2 chr1:119573841-119683295:- 0.26 4.89 1.15E-6 Waist-to-hip ratio adjusted for body mass index
BRCA cis rs6684514 1 rs10494304 chr1:156285764 BGLAP chr1:156182784-156213112:+ -0.17 -4.78 2.03E-6 Mean corpuscular hemoglobin concentration;Glycated hemoglobin levels
BRCA cis rs1049564 1 rs1049564 chr14:20940606 PNP chr14:20937542-20945246:+ -0.17 -4.28 2.02E-5 Interferon alpha levels in systemic lupus erythematosus